Publications

905a60de7d 5320ebf249  ffd936e32d

Books

Kraaijeveld K. 2018 Waarom je hond geen fruit hoeft te eten; huis-, tuin- en keukenverhalen over DNA. KNNV Uitgeverij, Zeist [popular science; in Dutch]

Research articles

-2024-

Kraaijeveld K, Bossers K, Petrusevski N, Pieterman S, Bruins-van Sonsbeek LGR, Wittink F 2024 ONT read assembly of the black rhino genome. BMC Genomic Data 25: 27. [open access]

-2023-

van der Gulik PTS, Egas M, Kraaijeveld K, Dombrowski N, Groot AT, Spang A, Hoff WD, Gallie J 2023 On distinguishing between canonical tRNA genes and tRNA gene fragments in prokaryotes. RNA Biology 20, 48–58. [open access]

Kraaijeveld K, Wiedijk L, Touw K, Kruithof F, Twigt A, Driessens G, Verbelen D 2023 Koningseider in Knokke: zuiver of hybride? Natuur.oriolus 89: 131-140.

-2022-

Wortel M et al. 2022 Towards evolutionary predictions: Current promises and challenges. Evolutionary Applications [open access]

Lammers M, Kraaijeveld K, Ellers J 2022 Lack of lipid accumulation in two species of chalcidoid wasps with secondarily evolved phytophagy. Entomol Exp Appl. 170:460–467. [open access]

-2021-

Wortel MT, Agashe D, Bailey SF, Bank C, Bisschop K, Blankers T, Cairns J, Colizzi ES, Cusseddu D, Desai MM, van Dijk B, Egas M, Ellers J, Groot AT, Hackel DG, Johnson ML, Kraaijeveld K, Krug J, Laan L, Laessig M, Lind PA, Meijer J, Noble LM, Okasha S, Rainey PB, Rozen DE, Shitut S, Tans SJ, Tenaillon O, Teotonio H, de Visser JAGM, Visser ME, Vroomans RMA, Werner GDA, Wertheim B, Pennings PS 2021 The why, what and how of predicting evolution across biology: from disease to biotechnology to biodiversity. [preprint]

-2020-

Kampfraath AA, Dudink TP, Kraaijeveld K, Ellers J, Zizzari ZV 2020 Male sexual trait decay in two asexual springtail populations follows neutral mutation accumulation theory. Evolutionary Biology 47: 285-292 [open access]

Roelofs D, Zwaenepoel A, Sistermans T, Nap J, Kampfraath AA, Van de Peer Y, Ellers Y, Kraaijeveld K 2020 Multi-faceted analysis provides little evidence for recurrent whole-genome duplications during hexapod evolution. BMC Biology 18:57. [open access]

Lammers M, van Gorkum TAM, Hoeijmans S, Kraaijeveld K, Harvey JA, Ellers J 2020 Lipids as currency in ecological interactions: Competition and facilitation between two lipid scavenging parasitoids. [bioRxiv]

Askari Seyahooei M, Kraaijeveld K, Bagheri A, van Alphen JJM 2019 Adult size and timing of reproduction in five species of Asobara parasitoid wasps. Insect Science 27:1334-1345.

-2019-

van Kruistum H, van den Heuvel J, Travis J, Kraaijeveld K, Zwaan BJ, Groenen MAM, Megens HJ, Pollux BJA 2019 The genome of the live-bearing fish Heterandria formosaimplicates a role of conserved vertebrate genes in the evolution of placental fish. BMC Evolutionary Biology 19:156. [open access]

Ellers J, Visser M, Mariën J, Kraaijeveld K, Lammers M 2019 The importance of validating the demethylating effect of 5-aza-2′-deoxycytidine in model species. American Naturalist 194: 422-431. [online]

Lammers M, Kraaijeveld K, Mariën J, Ellers, J 2019 Gene expression changes associated with the evolutionary loss of a metabolic trait: lack of lipogenesis in parasitoids. BMC Genomics 20:309 [open access]

Kraaijeveld K, Neleman P, Mariën J, de Meijer E, Ellers J 2019 Genomic resources for Goniozus legneri, Aleochara bilineata and Paykullia maculata, representing three independent origins of the parasitoid lifestyle in insects. G3 9: [open access]

Brandt A, Bast J, Scheu S, Meusemann K, Donath A, Schütte K, Machida R,  Kraaijeveld K 2019 No signal of deleterious mutation accumulation in conserved gene sequences of extant asexual hexapods. Scientific Reports [open access]

Kraaijeveld K 2019 Genetic architecture of novel ornamental traits and the establishment of sexual dimorphism: insights from domestic birds. Journal of Ornithology 160:861–868 [open access]

Kampfraath AA, Klasson LL, Anvar SY, Vossen RHAM, Roelofs D, Kraaijeveld K, Ellers J 2019 Genome expansion of an obligate parthenogenesis-associated Wolbachia endosymbiont challenges the genome reduction model. BMC Genomics 20:106 [open access]

-2018-

Kraaijeveld K, Oostra V, Liefting M, Wertheim B, de Meijer E, Ellers J 2018 Regulatory and sequence evolution in response to selection for improved associative learning ability in Nasonia vitripennis. BMC Genomics 19:892 [open access]

Geuverink E, Kraaijeveld K, van Leussen M, Chena F, Pijpe J, Linskens MHK, Beukeboom LW, van de Zande L 2018 Evidence for involvement of a transformer paralog in sex determination of the wasp Leptopilina clavipes. Insect Molecular Biology 27: 78-795 [open access]

-2017-

Kerkvliet J, de Boer T, Schilthuizen M, Kraaijeveld K 2017 Candidate genes for shell colour polymorphism in Cepaea nemoralis. PeerJ 5:e3715 [open access]

Trienens M, Kraaijeveld K, Wertheim B 2017 Defensive repertoire of Drosophila larvae in response to toxic fungi. Molecular Ecology 26: 5043-5057 [early view]

Faddeeva-Vakhrusheva A, Kraaijeveld K, Derks MFL, Anvar SY, Agamennone V, Suring W, Kampfraath AA, EllersJ, Le Ngoc G, van Gestel CAM, Mariën J, Smit S, van Straalen NM, Roelofs D 2017 Coping with living in the soil: the genome of the parthenogenetic springtail Folsomia candida. BMC genomics 18: 493 [open access]

Salazar-Jaramillo L, Jalvingh KM, de Haan A, Kraaijeveld K, Buermans H, Wertheim B 2017 Inter- and intra-species variation in the genome-wide gene expression of Drosophila in response to parasitoid wasp attack. BMC genomics 18:331 [open access]

– 2016 –

Kraaijeveld K, Anvar Y, Frank J, Schmitz A, Bast J, Wilbrandt J, Petersen M, Ziesmann T, Niehuis O, de Knijff P, den Dunnen JT, Ellers J 2016 Decay of sexual trait genes in an asexual parasitoid wasp. Genome Biology and Evolution 8:3685–3695. [open access]

Lepetit D, Gillet B, Hughes S, Kraaijeveld K, Varaldi J 2016 Genome sequencing of the behaviour manipulating virus LbFV reveals a possible new virus family. Genome Biology and Evolution 8:3718–3739. [open access]

– 2015 –

Bast J, Schaefer I, Schwander T, Maraun M, Scheu S, Kraaijeveld K 2015 No accumulation of transposable elements in asexual arthropods. Molecular Biology and Evolution 33: 697–706.

Faddeeva A, Studer RA, Kraaijeveld K, Sie D, Ylstra B, Mariën J, op den Camp HJM, Datema E, den Dunnen JT, van Straalen NM, Roelofs D 2015 Collembolan transcriptomes highlight molecular evolution of hexapods and provide clues on the adaptation to terrestrial life. PlosONE 10(6): e0130600.

van der Plas-Duivesteijn SJ, Kraaijeveld-Smit FJL, van Alphen JJM, Kraaijeveld K 2015 Harbour porpoise Phocoena phocoena strandings on the Dutch Coast: no genetic structure, but evidence of inbreeding. Journal of Sea Research 97: 24-27.

Vrijenhoek T, Kraaijeveld K, Elferink M, de Ligt J, Kranendonk E, Santen G, Nijman I, Butler D, Claes G, Costessi A, Dorlijn W, van Eyndhoven W, Halley DJJ, van den Hout MCGN, van Hove S, Johansson LF, Jongbloed JDH, Kamps R, Kockx CEM, de Koning B, Kriek M, Lekanne dit Deprez R, Lunstroo H, Mannens M, Nelen M, Ploem C, Rijnen M, Saris J, Sinke R, Sistermans E, van Slegtenhorst M, Sleutels F, van der Stoep N, van Tienhoven M, Vermaat M, Vogel M, Waisfisz Q, Weiss JM, van den Wijngaard A, van Workum W, Ijntema H, van der Zwaag B, van IJcken WFJ, den Dunnen J, Veltman JA, Hennekam R, Cuppen E 2015 Next-generation sequencing-based genome diagnostics across clinical genetics centers – implementation choices and their effects. European Journal of Human Genetics

Kraaijeveld K, de Weger LA, Ventayol García M, Buermans H, Frank J, Hiemstra PS, den Dunnen JT 2015 Efficient and sensitive identification and quantification of airborne pollen using next-generation DNA sequencing. Molecular Ecology Resources 15: 8-16

– 2014 –

Anvar SY, Khachatryan L, Vermaat M, van Galen M, Pulyakhina I, Ariyurek Y, Kraaijeveld K, den Dunnen JT, de Knijff P,’t Hoen PAC, Laros JFJ 2014 Determining the quality and complexity of next-generation sequencing data without a reference genome. Genome Biology 15: 555. [open access]

Anvar SY, Frank J, Pol A, Schmitz A, Kraaijeveld K, den Dunnen JT, Op den Camp HJM 2014 The genomic landscape of the verrucomicrobial methanotrophic Methylacidiphilum fumariolicum SolV. BMC Genomics 15:914

Kraaijeveld K 2014 Reversible trait loss: the genetic architecture of female ornaments. Annual Review of Ecology, Evolution and Systematics 45: 159-177

Chauhan P, Hansson B, Kraaijeveld K, de Knijff P, Svensson EI, Wellenreuther M 2014 De novo transcriptome of Ischnura elegans provides insights into sensory biology, colour and vision genes. BMC Genomics 15: 808.

Reumer BR, van Alphen JJM, Kraaijeveld K 2014 Reduced sexual functionality of PI-Wolbachia-infected females of Tetrastichus coeruleus. Entomologia Experimentalis et Applicata 153: 47-54.

Trimbos KB, Doorenweerd C, Kraaijeveld K, Musters CJM, Groen NM, de Knijff P, Piersma T & de Snoo GR 2014 Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa). Plos One 9(1): e83949

– 2013 –

Reumer BM, van Alphen JJM, Kraaijeveld K 2013 Population genetics of Wolbachia-infected, parthenogenetic and uninfected, sexual populations of Tetrastichus coeruleus (Hymenoptera: Eulophidae). Molecular Ecology 22: 4433-4444.

Staats M, Erkens RHJ, van de Vossenberg B, wieringa JJ, Kraaijeveld K, Stielow B, Geml J, Richardson JE, Bakker FT 2013 Genomic treasure troves: complete genome sequencing of herbarium and insect museum specimens. Plos One 8:7.

– 2012 –

Kraaijeveld K, Zwanenburg B, Hubert B, Vieira C, de Pater S, van Alphen JJM, den Dunnen JT & de Knijff P 2012 Transposon proliferation in an asexual wasp. Molecular Ecology 21: 3898-3906.

Reumer BM, van Alphen JJM, Kraaijeveld K 2012 Occasional males in parthenogenetic populations of Asobara japonica (Hymenoptera: Braconidae): low Wolbachia titer or incomplete co-adaptation? Heredity 108: 341-346.

– 2011 –

Kraaijeveld K, Franco P, de Knijff P, Stouthamer R & van Alphen JJM 2011 Clonal genetic variation in a Wolbachia-infected asexual wasp: horizontal transmission or historical sex? Molecular Ecology 20: 3644-3652.

Askari Seyahooei M, van Alphen JJM & Kraaijeveld K 2011 Metabolic rate affects adult life span independently of developmental rate in parasitoid wasps. Biological Journal of the Linnean Society 103: 45-56.

Kraaijeveld K, Reumer BM, Mouton L, Kremer N, Vavre F & van Alphen JJM 2011 Does a parthenogenesis-inducing Wolbachia induce vestigial cytoplasmic incompatibility?. Naturwissenschaften 98: 175-180.

Askari Seyahooei M, van Alphen JJM & Kraaijeveld K 2011 Genetic structure of Leptopilina boulardi populations from different climatic zones of Iran. BMC Ecology 11: 4.

Kraaijeveld K, Kraaijeveld-Smit FJL & Maan M 2011 Sexual selection and speciation: the comparative evidence revisited. Biological Reviews 86: 367-377.

– 2010-

Kraaijeveld K 2010 Genome size and species diversification. Evolutionary Biology 37: 227-233.

Reumer BM, van Alphen & Kraaijeveld K 2010 Ecology, Wolbachia infection frequency and mode of reproduction in the parasitoid wasp Tetrastichus coeruleus (Hymenoptera: Eulophidae). Molecular Ecology 19: 1733-1744.

– 2009 –

Kraaijeveld K, Franco P, Reumer BM, van Alphen JJM 2009 Effects of parthenogenesis and geographic isolation on female sexual traits in a parasitoid wasp. Evolution 63: 3085-3096.

Kraaijeveld K 2009 Male genes with nowhere to hide: sexual conflict in haplodiploids. Animal Biology 59: 403-415.

Kremer N, Charif D, Henri H, Bataille M, Prévost G, Kraaijeveld K & Vavre F 2009 A new case of Wolbachia dependence in the genus Asobara: evidence for parthenogenesis induction in A. japonica. Heredity 103: 248-256.

Askari Seyahooei M, Kraaijeveld-Smit FJL, Kraaijveld K, Crooijmans JBM, Van Dooren TJM & van Alphen JJM 2009 Closely related parasitoids induce different pupation and foraging responses in Drosophila larvae. Oikos 118: 1148-1157.

– 2008 –

Kraaijeveld K, Denniff M, Baker RH & Chapman T 2008 The evolution of sperm and non-sperm producing organs in male Drosophila. Biological Journal of the Linnean Society 94: 505-512.

Kraaijeveld K 2008 Non-breeding habitat preference affects ecological speciation in migratory waders. Naturwissenschaften 95: 347-354.

– 2007 –

Kraaijeveld K, Kraaijeveld-Smit FJL & Komdeur J 2007 The evolution of mutual ornamentation. Animal Behaviour 74: 657-677.

Kraaijeveld K, Ma M, Komdeur J & Mulder RA 2007 Offspring sex ratios in relation to mutual ornamentation and extra-pair paternity in the black swan. Ibis 149: 79-85.

Reumer B, Kraaijeveld K & van Alphen JJM 2007 Selection in the absence of males does not affect male-female conflict in the parasitoid wasp Leptopilina clavipes (Hymenoptera: Figitidae). Journal of Insect Physiology 53: 994-999.

– 2006 –

– 2005 –

Kraaijeveld K 2005 Black swans Cygnus atratus adopt related cygnets. Ardea 93: 163-169.

Kraaijeveld K, Katsoyannos BI, Stavrinides M, Kouloussis NA & Chapman T 2005 Remating in wild females of the Mediterranean fruit fly, Ceratitis capitata. Animal Behaviour 69: 771-776.

Seddon N, Amos W, Adcock G, Johnson P., Kraaijeveld K, Kraaijeveld-Smit FJL, Lee W, Senapathi GD, Mulder RA & Tobias JA 2005 Mating system, philopatry and patterns of kinship in the cooperatively breeding subdesert mesite Monias benschi. Molecular Ecology 14: 3573-3583.

– 2004 –

Kraaijeveld K, Gregurke J, Hall C, Komdeur J & Mulder RA 2004 Mutual ornamentation, sexual selection and social dominance in the black swan. Behavioral Ecology 15: 380-389.

Kraaijeveld K, Carew PJ, Billing T, Adcock GJ & Mulder RA 2004 Extra-pair paternity does not result in differential sexual selection in the mutually ornamented black swan (Cygnus atratus). Molecular Ecology 13: 1625-1633.

Kraaijeveld K & Chapman T 2004 Effects of male sterility on female remating in the Mediterranean Fruit Fly, Ceratitis capitata. Proceedings of the Royal Society of London B (Suppl. Biology Letters) 271: S209-S211.

Komdeur J, Piersma T, Kraaijeveld K, Kraaijeveld-Smit F & Richardson DS 2004 Why Seychelles warblers fail to recolonize nearby islands: unwilling or unable to fly there? Ibis 146: 298-302.

– 2003 –

Kraaijeveld K 2003 Degree of mutual ornamentation is related to divorce rate in birds. Proceedings of the Royal Society of London B 270:1785-1791.

Kraaijeveld K, Kraaijeveld-Smit FJL & Adcock GJ 2003 Does female mortality drive male semelparity in dasyurid marsupials? Proceedings of the Royal Society of London B (Suppl. Biology Letters) 270: S251-S253.

Kraaijeveld K & Komdeur J 2003 Observations on the breeding ecology of the Seychelles Fody on Cousine Island. Ostrich 74: 117-124.

Kraaijeveld K, Minton C, Collins P & Jessop R 2003 The first catch of Banded Stilts in Victoria; biometrics, moult and age/sex structure. Stilt 43: 14-19.

Kraaijeveld K & Mulder RA 2003 Brood parasitism of Black Swans by Musk Ducks. Wildfowl 53: 127-135

– 2002 –

Kraaijeveld K & Mulder RA 2002 Musk duck brood parasitism on black swans. Wildfowl 53:127-135 [pdf]

Taylor AC, Kraaijeveld K & Lindenmayer DB 2002 Microsatellites for the greater glider, Petauroides volans. Molecular Ecology Notes 2: 57-59.

– 2001 –

Kraaijeveld K & Dickinson JL 2001 Family-based winter territoriality in western bluebirds (Sialia mexicana):the structure and dynamics of winter groups. Animal Behaviour 61: 109-117.

Kraaijeveld K & Kraaijeveld-Smit F 2001 Moleculaire technieken onthullen geheimen in de vogelwereld. Limosa 74: 57-65.

Ma M, Minton C, Kraaijeveld K, Jessop R & Gosbell K 2001 Banding on the waders and terns between Australia and China. Zoological Research 22: 166-168. (in Chinese).

– 2000 –

Kraaijeveld K & Mulder RA 2000. The function of triumph ceremonies in the Black Swan. Behaviour 139: 45-54.

Kraaijeveld K & Nieboer EN 2000 Late Quaternary paleogeography and evolution of Arctic breeding waders. Ardea 88: 193-205.

Dickinson JL, Kraaijeveld K, Smit-Kraaijeveld F 2000 Specialized extrapair mating display in Western Bluebirds. The Auk 117:1078-1080.

Ma M & Kraaijeveld K 2000 Recent records of waders in Xinjiang Uygur Autonomous Region, north-western China. Wader Study Group Bulletin 92: 25-29.

– 1999 –

Komdeur J, Kraaijeveld-Smit F, Kraaijeveld K, Edelaar P 1999 Explicit experimental evidence for the role of mate guarding in minimizing loss of paternity in the Seychelles Warbler. Proceedings of the Royal Society of London B 226: 2075-2081.

– 1998 –

Copsey JA & Kraaijeveld K 1998 A short study of the Wedge-tailed Shearwater (Puffinus pacificus) on Cousine Island, Seychelles. Phelsuma 6: 53-57.

 

Book chapters

Kraaijeveld K 2013 Why northern hemisphere waders did not colonize the south. In: Prins HHT & Gordon I (eds) Invasion biology and ecological theory: insights from a continent in transformation. Cambridge University Press, Cambridge, pp. 373-388.

Kraaijeveld K & Bast J 2012 The genomic consequences of asexual reproduction. In: de Sousa F & Munevar G (ed) Sex, reproduction and Darwinism. Pickering & Chatto, UK, pp. 49-59.

Kraaijeveld K & Reumer BM 2008 Constraints and the evolution of mutual ornamentation. In: Weber EA and Krause LH (eds) Animal Behaviour, new research. Nova Publishers, New York, pp. 193-213.

 

Commentaries

van der Plas-Duivesteijn S, Kraaijeveld K 2016 Response to Kopps & Palsboll. Journal of Sea Research 110: 16.

Kraaijeveld K & Bast J 2012 Transposable element proliferation as a possible side effect of endosymbiont manipulations. Mobile Genetic Elements 2: 253-256.

Kraaijeveld K 2012 The genome generation. Human Mutation 33:1397.

Kraaijeveld K 2010 Niet ijsbeer, maar muskusos komt in het nauw. Bionieuws 20(4): 12.

Kraaijeveld K & Pomiankowski A 2004 Love thy neighbour. Current Biology 14: R419-R421.

Kraaijeveld K 2000 The phylogenetic species concept and its place in modern evolutionary thinking. Ardea 88: 265-267. [letter to the editor]

 

Regular columns

Entomologische Berichten (Netherlands Entomological Society) – since 2010

Ridderspoor (publication of my local allotment complex) – since 2010

 

National articles and popular science

Kraaijeveld K & van ’t Bosch J 2020 Zadellibellen op Goeree in de zomer van 2019. Sterna

Nieboer E., Kraaijeveld K, van Loon A 2017 Verandering in de timing van de najaarstrek van de Fitis op Schiermonnikoog in 1969-2010. Limosa 90: 72-76.

Kraaijeveld K, Lammers M, Kerkvliet J, Essens J, Grashof D, Zwart J, den Dunnen J, Goedbloed J 2017 De herkomst van meidoornspanners op Walcheren: DNA-onderzoek anno 2016. Entomologische Berichten 77: 18-22. [pdf]

Sundstrom J, Gardner J, Whiteside M, Kraaijeveld K, Kiers T, Ellers J, Jiranek V 2016 Insecten als wijnmakers. Entomologische Berichten 76: 122-1125.

Kraaijeveld K 2012 Wetenschappelijke scheurkalender; Natuur & Techniek wetenschapsmagazine. [seven contributions]

Kraaijeveld K 2011 Wetenschappelijke scheurkalender; Natuur & Techniek wetenschapsmagazine. [seven contributions]

Kraaijeveld K 2010 Wetenschappelijke scheurkalender; Natuur & Techniek wetenschapsmagazine. [seven contributions]

Kraaijeveld K 2009 De consequenties van aseksualiteit voor Leptopilina clavipes (Hymenoptera: Figitidae). Entomologische Berichten 69: 111-115.

Kraaijeveld K 2009 Wetenschappelijke scheurkalender; Natuur & Techniek wetenschapsmagazine. [seven contributions]

Kraaijeveld K 2008 Wetenschappelijke scheurkalender; Natuur & Techniek wetenschapsmagazine. [seven contributions]

Kraaijeveld K 2006 Faunapassages met sporenbedden. Natura 2006(1): 18-20.

Kraaijeveld K 2004 Over vliegen-liefde en hoofdpijn bij fruittelers. Natura 2004(2): 42-44.

Mulder RA & Kraaijeveld K 2004 Curly cues. Nature Australia autumn 2004: 34-43

Kraaijeveld K 2002 De wederzijdse liefde van de Fuut. Natura 99:132-135

Kraaijeveld K 1999 Helpen is mannenwerk: cooperatief gedrag in de vogelwereld. Natura 96: 10-11.

Kraaijeveld K 1998 Koude oorlog tussen Koekoek en Graspieper. Natura 95: 107-108.